Rotector, see if it has tripped. Power surges often cause intermittent errors in pool equipment. If you find any burnt or melted connectors, the problem may be electrical and needs immediate attention from a qualified electrician.
Step 6: Review Control Board And Firmware
- Cycle Power: Turn the system off for 5 minutes, then restart. Sometimes, a simple reboot resets minor glitches.
- Check for Updates: Some Intellichlor models allow firmware updates. Check the manufacturer’s website or contact support for instructions.
- Inspect the Board: Look for any obvious damage—burn marks, corrosion, or loose components.
Non-obvious Insight
Pool control boards can be sensitive to humidity and insects. Tiny ants or spiders sometimes nest inside, causing strange errors. Open the panel and check for signs of pests if nothing else works.
Preventing Future Flashing Red And Green Warnings
Solving the current problem is good. Preventing it from coming back is better. Here’s how you keep your Intellichlor running well and avoid those annoying flashing lights.
Maintain The Right Salt Level
- Test weekly: Pool salt levels can change due to rain, splash-out, or refilling.
- Add salt slowly: Always dissolve completely and retest before adding more.
- Record changes: Keeping a log helps you spot trends and catch problems early.
Keep Water Flow Steady
- Clean filters regularly: Most pool owners should clean or backwash filters every 2-4 weeks, more often in high use or after storms.
- Inspect skimmers and baskets: Debris quickly blocks flow, especially after windy days.
- Watch pump run time: Running the pump for at least 8-12 hours daily in hot weather helps ensure enough circulation for chlorine generation.
Clean And Inspect The Cell
- Monthly visual check: Even if the system says the cell is clean, look inside for early buildup.
- Descale every 3 months: Pools with hard water need more frequent cleaning.
- Use proper cleaning solution: Avoid strong acids or household cleaners, which can damage the cell.
Practical Tip
If your area has hard water, installing a pre-filter or water softener on your fill line can slow down scaling and extend cell life.
Monitor Cell Life
- Know your cell’s age: Mark the installation date on your calendar.
- Plan for replacement: If your cell is over 5 years old, budget for a new one soon—even if it’s still working. This avoids sudden downtime in the peak swimming season.
Protect Against Power Issues
- Install a surge protector: Pool equipment is expensive and sensitive; a $20 surge suppressor can save you hundreds in repairs.
- Check after storms: Following a lightning storm or outage, inspect your system. Power fluctuations often cause hidden problems.
Update Firmware And Inspect Control Board
- Check for software updates annually: This can fix bugs and improve reliability.
- Keep the board dry: Seal any gaps where insects or moisture might enter.
Maintain Good Water Chemistry
- Balance pH and alkalinity: Out-of-balance water can reduce chlorine efficiency and cause scaling.
- Test all chemicals: Low stabilizer, high calcium, or metals in the water can all affect your Intellichlor.
- Shock your pool: Occasionally use traditional chlorine to “reset” the water and give the cell a break.
When To Call A Professional
Sometimes, even with your best efforts, the Intellichlor continues flashing red and green. Here’s how to know when you need expert help:
- You’ve cleaned the cell and checked salt and flow, but the warning returns immediately.
- The system won’t power on, or you smell burning—this could be an electrical fault.
- There’s no chlorine production, and the water is turning green.
- You see unusual error codes or messages you can’t find in the manual.
Pool professionals have specialized tools to test cells, control boards, and wiring. They can often diagnose issues faster, and their work is usually guaranteed. While it costs more upfront, it can save you time, money, and frustration in the long run.

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Real-world Examples
Seeing how other pool owners have handled these warnings can help you troubleshoot your own system.
Example 1: Salt Level Too Low
Maria noticed her pool water was a bit cloudy, and the Intellichlor was flashing red and green. She tested the salt, and it was 2100 ppm—well below the recommended range. After adding the correct amount of salt and running the pump for 24 hours to fully mix, the warning lights stopped.
Lesson: Always test and adjust salt levels before looking for more complicated issues.
Example 2: Dirty Cell After Vacation
Greg went away for two weeks and came back to flashing red and green lights. He found thick white calcium deposits on the cell. After a careful acid wash and a 24-hour run, the system returned to normal.
Lesson: Pool downtime or lapses in maintenance can quickly lead to scaling and errors.
Example 3: Pump Timer Problem
Sam’s pool pump timer failed, so the water was only circulating for 2 hours per day. The Intellichlor flashed red and green, as it didn’t have enough flow. Fixing the timer and running the pump for 10 hours per day solved the issue.
Lesson: Pool equipment depends on each part working together. A simple timer error can cause confusing warnings.
Example 4: Power Surge Damage
After a thunderstorm, Lisa’s chlorinator started flashing red and green, even though the salt and cell were fine. An electrician found her surge protector had fried, and the control board needed replacing.
Lesson: Sudden electrical problems can cause persistent warnings—protect your equipment and check after storms.
What If The Problem Persists?
If you’ve checked all the steps above and your Intellichlor still flashes red and green, here are some advanced actions:
- Check for firmware updates: Visit the manufacturer’s [official support page](https://www.pentair.com/en-us/support/troubleshooting.html) for troubleshooting and software downloads.
- Reset to factory settings: Some models allow a full reset; consult your manual.
- Test with a different cell: If possible, swap in a working cell to see if the problem clears—this helps identify if the cell or the control board is at fault.
- Document error patterns: Take photos or videos of the lights and write down when the errors appear. This helps professionals diagnose the issue.

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Frequently Asked Questions
How Often Should I Clean My Intellichlor Cell?
Most pool owners should check and clean the cell every 2-3 months during the swimming season. If you have hard water or notice faster scaling, clean monthly.
Can I Use Regular Table Salt In My Pool?
No. Only use pool-grade salt. Table salt often contains additives that can harm your pool and the chlorinator cell.
Is It Safe To Swim When The Intellichlor Is Flashing Red And Green?
If chlorine levels are still safe (1-3 ppm), it’s generally okay to swim. However, address the warning as soon as possible to avoid water quality problems.
Will Running The Intellichlor With Low Salt Damage The Cell?
Yes. Running with low salt makes the cell work harder, which can shorten its life and reduce chlorine production.
My Lights Are Still Flashing After Cleaning And Adjusting Everything. What Now?
Persistent flashing may mean your cell is at the end of its life, the control board is faulty, or there’s an electrical problem. Contact a pool service professional.
Final Thoughts
The Intellichlor Salt Chlorine Generator is a reliable, time-saving device—when it’s working correctly. Flashing red and green lights are your system’s way of asking for attention. Most of the time, the solution is simple: check your salt, clean the cell, confirm water flow, and inspect power. With regular maintenance and a little troubleshooting, you can keep your pool sparkling and avoid expensive repairs.
Remember, even experts miss the small stuff—like a clogged skimmer or a loose wire—so always check the basics first. And if you’re ever in doubt, don’t hesitate to call in a professional. Taking care of your Intellichlor means more worry-free swimming and fewer surprises.
For more detailed troubleshooting and support, you can always refer to the official [Pentair support page](https://www.pentair.com/en-us/support/troubleshooting.html). This resource offers updated manuals, error code explanations, and contact information if you need extra help.

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